fix: patch the correct db path

core/framework/host/progress_db.py

@@ -191,19 +191,28 @@ def ensure_progress_db(colony_dir: Path) -> Path:
 
 
 def _patch_worker_configs(colony_dir: Path, db_path: Path) -> int:
-    """Inject ``input_data.db_path`` + ``input_data.colony_id`` into
-    existing ``worker.json`` files in a colony directory.
+    """Inject ``input_data.db_path`` + ``input_data.colony_id`` +
+    ``input_data.colony_data_dir`` into existing ``worker.json`` files
+    in a colony directory.
 
     Runs on every ``ensure_progress_db`` call so colonies that were
     forked before this feature landed get their worker spawn messages
     patched in place. Idempotent: if ``input_data`` already contains
-    the correct ``db_path``, the file is not rewritten.
+    all three values, the file is not rewritten.
 
     Returns the number of files that were actually modified (0 on
     the common case of already-patched colonies).
+
+    Why ``colony_data_dir``? ``db_path`` alone points agents at
+    ``progress.db``; for anything else (custom SQLite stores, JSON
+    ledgers, scraped artefacts) they need the *directory* so they
+    stop creating state under ``~/.hive/skills/`` — which holds skill
+    *definitions*, not runtime data. See
+    ``_default_skills/colony-storage-paths/SKILL.md``.
     """
     colony_id = colony_dir.name
     abs_db = str(db_path)
+    abs_data_dir = str(db_path.parent)
     patched = 0
 
     for worker_cfg in colony_dir.glob("*.json"):
@@ -227,11 +236,13 @@ def _patch_worker_configs(colony_dir: Path, db_path: Path) -> int:
         if (
             input_data.get("db_path") == abs_db
             and input_data.get("colony_id") == colony_id
+            and input_data.get("colony_data_dir") == abs_data_dir
         ):
             continue  # already patched
 
         input_data["db_path"] = abs_db
         input_data["colony_id"] = colony_id
+        input_data["colony_data_dir"] = abs_data_dir
         data["input_data"] = input_data
 
         try:
@@ -246,7 +257,8 @@ def _patch_worker_configs(colony_dir: Path, db_path: Path) -> int:
 
     if patched:
         logger.info(
-            "progress_db: patched %d worker config(s) in colony '%s' with db_path",
+            "progress_db: patched %d worker config(s) in colony '%s' with "
+            "db_path + colony_data_dir",
             patched,
             colony_id,
         )